Visually, PlotlyJS produces the most appealing plots (for me). But it does not install on my system (1.5).
When a plotting related library is not found (as in “error compiling display”), try
Defaults are set with the defaults command.
bar tends to have too small default margins for axis labels to show (at least in subplots). Try
Saturation is given by a number between 0 and 1 as in
color = (:blue, 0.2).
The label is set when each series is plotted. If labels are set when the plot is created (before the series are plotted), the entries are ignored.
Switch off lines around bars with
linealpha = 0.
Dict with default arguments for each plot type, such as:
bar_defaults() = Dict([:leg => :bottom, :linecolor => :black]);
Make a function for each plot type, such as:
function bar_graph(groupLabelV, dataV; kwargs...) args = merge(bar_defaults(), kwargs); p = bar(groupLabelV, dataV; args...); return p end
Now any default arguments can be overridden and
bar_graph is called exactly as
bar would be.
It helps to write plotting functions that take a
Figure as an input:
# Make a stand-alone figure. Could be omitted. function myplot(x, y; kwargs...) fig = Figure(); myplot!(f, x, y; kwargs...) return fig end # Plot into existing Figure. function myplot!(fig :: Figure, x, y; pos = (1,1), kwargs...) ax = fig[pos...] = Axis(fig; xlabel = "x"); myplot!(ax, x, y; kwargs...); return ax end # Plot into existing Axis function myplot!(ax :: Axis, x, y; kwargs...) lines!(ax, x, y; kwargs...); end # Now we can make a stand-alone figure with fig = Figure(); myplot!(fig, x, y); # Or we can make a subplot with fig = Figure(); myplot!(fig, x, y; pos = (2,1));
kwargs cannot be used to create the axis.
Looping over axes¶
One way of creating a figure with subplots is:
fig = Figure(); nr = 2; nc = 3; for ir = 1:nr, ic = 1:nc ax = fig[ir, ic] = Axis(fig); end
This fixes the layout. Now we can iterate over the subplots with
ind2sub(j, sz) = Tuple(CartesianIndices(sz)[j]); for j = 1 : (nr * nc) fig[ind2sub(j, (nr,nc))...] end
The roundabout way is necessary because
Figure does not support linear or cartesian indexing.
Grouped bar graphs¶
Building up a grouped bar graph by plotting each series one at a time does not work. The first series bar is too wide (it covers the width of the entire group of bars). One could set it by hand, but it is not clear how.
axislegend does not work for grouped bar graphs (lacking labels).
Makie ignores invalid keyword arguments. This makes it possible to "flatten" keyword arguments; i.e., one can provide that
Axis arguments in the same list as the series arguments. For example, this works:
lines(x, y; xlabel = "x");
lines!(ax, x, y; xlabel = "x");
nothing works with keyword arguments such as
ylims appears to be ignored. Need to use
ylims!(ax, lims). Unspecified bounds are set to
update_theme!(thm, Lines = (linewidth = 4,)) creates a new "section"
thm.Lines that applies to lines.
update_theme!(thm, Lines = (linestyle = :dash,)) merges the new information into the existing
Lines section. It does not replace previous content.
Text sizes are determined by separate attributes for all elements; e.g.,
Setting line colors from the theme's
thm = theme_dark(); update_theme!(thm; colormap = ColorSchemes.leonardo); function make_figure() fig = Figure(); ax = fig[1,1] = Axis(fig); for j = 1 : 4; lines!(ax, 1:10, (1:10) .^ (1/j); color = fill(j, 10), colorrange = (1,4)); end return fig end fig = with_theme(make_figure, thm);
Errors in theme settings cause
merge! errors when plotting that bear no obvious relationship to themes.
Saving data with plots¶
VegaLite does this natively.
with Plots.jl one can use hdf5plot_write to write an entire plot, including the data, to an hdf5 file.
This means that each plot has to be generated twice; once with whatever backend is used to generate PDF files; and then again with hdf5. In particular, one cannot first plot with another backend and then save the resulting plot object to hdf5.
The approach is then to first save the plot to hdf5, then load it and save it with another backend.
Note: In my current (v.1.3) installation, hdf5plot_write generates a bunch or warnings followed by a crash due to world age problems.